3V0X

Bovine trypsin variant X(tripleGlu217Phe227) in complex with small molecule inhibitor

Structural Biology Knowledgebase: 3V0X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.159

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3V0X

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 24045.25

Macromolecule Entities
Molecule Chains Length Organism Details
Cationic trypsin A 223 Bos taurus EC#: 3.4.21.4 IUBMB
Mutation: N97E, L99Y, N115X, Y172S, P173S, G174F, Q175I, A183V, S190A, S217E, V227F
Gene Name(s):

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANH
Query on ANH

A METHYL N-[(4-METHYLPHENYL)SULFONYL]GLYCYL- 3-[AMINO(IMINO)METHYL]-D-PHENYLALANINATE
L-PHENYLALANINE-ISOPROPYLESTER, (Synonym)
C20 H24 N4 O5 S
YAEIKQDHLCFGAA-KRWDZBQOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
DSG
Query on DSG
A D-PEPTIDE LINKING C4 H8 N2 O3 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.159
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.49 α = 90.00
b = 57.48 β = 90.00
c = 67.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-09
  • Released Date: 2012-12-12
  • Deposition author(s): Tziridis, A., Neumann, P., Kolenko, P., Stubbs, M.T.

Revision History

No revisions since initial release