3UZP

crystal structure of ck1d with PF670462 from P21 crystal form

Structural Biology Knowledgebase: 3UZP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 3UZP

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 69376.68

Macromolecule Entities
Molecule Chains Length Organism Details
Casein kinase I isoform delta A, B 296 Homo sapiens EC#: 2.7.11.1 IUBMB
Gene Name(s): CSNK1D Gene View HCKID
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0CK
Query on 0CK

A, B 4-[1-cyclohexyl-4-(4-fluorophenyl)-1H-imidazol- 5-yl]pyrimidin-2-amine
C19 H20 F N5
WUDBUIUHVNECTM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0CK IC50: 7.8 - 130 nM (97 - 100) BindingDB

N/A in BindingMoad
IC50: 13 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.94 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.222
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.00 α = 90.00
b = 72.80 β = 103.21
c = 88.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-07
  • Released Date: 2012-01-11
  • Deposition author(s): Huang, X.

Revision History

  • 2012-11-14
    Type: Citation | Details: Citation update