3UVP

Human p38 MAP Kinase in Complex with a Benzamide Substituted Benzosuberone

Structural Biology Knowledgebase: 3UVP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.215

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UVP

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 42242.69

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 14 A 360 Homo sapiens EC#: 2.7.11.24 IUBMB
Gene Name(s): MAPK14 Gene View CSBP CSBP1 CSBP2 CSPB1 MXI2 SAPK2A

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
048
Query on 048

A N-{2-fluoro-5-[(5-oxo-6,7,8,9-tetrahydro- 5H-benzo[7]annulen-2-yl)amino]phenyl}benzamide
C24 H21 F N2 O2
ATBLOTYVKHVLPU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BOG
Query on BOG

A B-OCTYLGLUCOSIDE
C14 H28 O6
HEGSGKPQLMEBJL-RKQHYHRCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
048 IC50: 35 nM (100) BindingDB

IC50: 35 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.215
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.00 α = 90.00
b = 68.80 β = 90.00
c = 74.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-30
  • Released Date: 2012-11-07
  • Deposition author(s): Mayer-Wrangowski, S.C., Richters, A., Gruetter, C., Rauh, D.

Revision History

  • 2013-01-16
    Type: Citation | Details: correct citation title
  • 2013-01-16
    Type: Entry title | Details: update entry title