3UVC

MMP12 in a complex with the dimeric adduct: 5-(5-phenylhydantoin)-5-phenylhydantoin

Structural Biology Knowledgebase: 3UVC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.174
  • R-Value Work: 0.130

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UVC

Classification: HYDROLASE

Total Structure Weight: 38266.66

Macromolecule Entities
Molecule Chains Length Organism Details
Macrophage metalloelastase A, B 164 Homo sapiens EC#: 3.4.24.65 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 106-263
Mutation: E219A
Gene Name(s): MMP12 Gene View HME

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0D2
Query on 0D2

A (4R,4'S)-4,4'-diphenyl-4,4'-biimidazolidine- 2,2',5,5'-tetrone
C18 H14 N4 O4
ZRUGFCSNTLNZEL-HDICACEKSA-N
Ligand Explorer
 
JSmol
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
IMD
Query on IMD

A, B IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
Ligand Explorer
 
JSmol
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.174
  • R-Value Work: 0.130
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 39.75 α = 90.00
b = 60.63 β = 103.10
c = 58.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-29
  • Released Date: 2013-01-02
  • Deposition author(s): Derbyshire, D.J., Danielson, H., Nystrum, S.

Revision History

No revisions since initial release