3UU1

Anthranilate phosphoribosyltransferase (trpD) from Mycobacterium tuberculosis (complex with inhibitor ACS142)

Structural Biology Knowledgebase: 3UU1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.212

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UU1

Classification: Transferase / Transferase Inhibitor

Total Structure Weight: 157617.86

Macromolecule Entities
Molecule Chains Length Organism Details
Anthranilate phosphoribosyltransferase A, B, C, D 377 Mycobacterium tuberculosis EC#: 2.4.2.18 IUBMB
Gene Name(s): trpD Rv2192c MTCY190.03c

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PRP
Query on PRP

A, B, C, D ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID
C5 H13 O14 P3
PQGCEDQWHSBAJP-TXICZTDVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
14B
Query on 14B

A, B, C, D 2-amino-3,5-dimethylbenzoic acid
C9 H11 N O2
GIMYRAQQQBFFFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
14B Ki: 6300 nM (100) BindingDB

N/A in BindingMoad
Ki: 6300 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.212
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 78.23 α = 90.00
b = 110.96 β = 89.97
c = 80.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-27
  • Released Date: 2012-12-12
  • Deposition author(s): Castell, A., Short, F.L., Lott, J.S.

Revision History

  • 2013-11-27
    Type: Citation | Details: Citation update
  • 2013-04-10
    Type: Citation | Details: Citation update
  • 2013-02-20
    Type: Citation | Details: Citation update