3UJO

Galactose-specific seed lectin from Dolichos lablab in complex with adenine and galactose

Structural Biology Knowledgebase: 3UJO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UJO

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 123977.40

Macromolecule Entities
Molecule Chains Length Organism Details
Legume lectin A, B, C, D 281 Lablab purpureus

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADE
Query on ADE

A, B, C, D ADENINE
C5 H5 N5
GFFGJBXGBJISGV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
CA
Query on CA

A, B, C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
EDO
Query on EDO

A, B, C, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
GAL
Query on GAL

A, B, C, D BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer
 
JSmol
MN
Query on MN

A, B, C, D MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
PEG
Query on PEG

B, C DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.207
  • Space Group: P 32

Unit Cell:

Length (Å) Angle (°)
a = 89.78 α = 90.00
b = 89.78 β = 90.00
c = 123.89 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-08
  • Released Date: 2012-11-14
  • Deposition author(s): Shetty, K.N., Latha, V.L., Rao, R.N., Nadimpalli, S.K., Suguna, K.

Revision History

  • 2013-10-30
    Type: Citation | Details: Citation update