3UGL

Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase C delta

Structural Biology Knowledgebase: 3UGL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.170
  • R-Value Work: 0.147

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3UGL

Classification: METAL BINDING PROTEIN

Total Structure Weight: 15443.83

Macromolecule Entities
Molecule Chains Length Organism Details
Proteine kinase C delta type A, B 65 Mus musculus EC#: 2.7.11.13 IUBMB
Fragment: C1B Subdomain of PKC delta, UNP residues 231-280
Gene Name(s): Prkcd Pkcd

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
09V
Query on 09V

A, B cyclopropylmethanol
C4 H8 O
GUDMZGLFZNLYEY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.36 Å
  • R-Value Free: 0.170
  • R-Value Work: 0.147
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 43.88 α = 90.00
b = 32.52 β = 94.02
c = 49.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-02
  • Released Date: 2012-12-12
  • Deposition author(s): Shanmugasundararaj, S., Stehle, T., Miller, K.W.

Revision History

  • 2013-03-27
    Type: Citation | Details: Citation update