3SY7

Improved crystal structure of Pseudomonas aeruginosa OprD

Structural Biology Knowledgebase: 3SY7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3SY7

Classification: membrane protein

Total Structure Weight: 49402.24

Macromolecule Entities
Molecule Chains Length Organism Details
Porin D A 428 Pseudomonas aeruginosa EC#: 3.4.21 IUBMB
Fragment: unp residues 24-443
Mutation: F140V
Gene Name(s): oprD PA0958

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Outer Membrane Carboxylate Channels (Occ)

Protein Name: OccD1 (OprD) basic amino acid uptake channel


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C8E
Query on C8E

A (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.196
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 136.41 α = 90.00
b = 103.89 β = 107.68
c = 47.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-07-15
  • Released Date: 2012-02-08
  • Deposition author(s): van den Berg, B., Eren, E.

Revision History

No revisions since initial release