3S6Z

Structure of reovirus attachment protein sigma1 in complex with alpha-2,8-disialyllactose

Structural Biology Knowledgebase: 3S6Z SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.173

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3S6Z

Classification: VIRAL PROTEIN

Total Structure Weight: 107608.65

Macromolecule Entities
Molecule Chains Length Organism Details
Outer capsid protein sigma-1 A, B, C 325 Mammalian orthoreovirus Fragment: Head and body, residues 170-445
Mutation: T249I, A408T
Gene Name(s): S1

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SIA
Query on SIA

A, C O-SIALIC ACID
C11 H19 N O9
SQVRNKJHWKZAKO-YRMXFSIDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

A, C BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.28 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.173
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 87.15 α = 90.00
b = 333.18 β = 90.00
c = 58.49 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-26
  • Released Date: 2011-11-23
  • Deposition author(s): Reiter, D.M., Dermody, T.S., Stehle T.

Revision History

No revisions since initial release