3PG9

Thermotoga maritima DAH7P synthase in complex with inhibitor

Structural Biology Knowledgebase: 3PG9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.171

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3PG9

Classification: Transferase / Transferase inhibitor

Total Structure Weight: 301261.04

Macromolecule Entities
Molecule Chains Length Organism Details
Phospho-2-dehydro-3-deoxyheptonate aldolase A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 338 Thermotoga maritima EC#: 2.5.1.54 IUBMB
Gene Name(s): aroF TM_0343

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TYR
Query on TYR

A, B, C, D, H TYROSINE
C9 H11 N O3
OUYCCCASQSFEME-QMMMGPOBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO3
Query on NO3

A, C, D, F NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AZI
Query on AZI

A, B AZIDE ION
N3
IVRMZWNICZWHMI-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.171
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 81.61 α = 90.00
b = 121.00 β = 92.12
c = 133.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-31
  • Released Date: 2011-01-26
  • Deposition author(s): Cross, P.J., Dobson, R.C.J., Patchett, M.L., Parker, E.J.

Revision History

  • 2012-08-22
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4