3OZU

The Crystal Structure of flavohemoglobin from R. eutrophus in complex with miconazole

Structural Biology Knowledgebase: 3OZU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 3OZU

Classification: LIPID BINDING PROTEIN

Total Structure Weight: 46745.54

Macromolecule Entities
Molecule Chains Length Organism Details
Flavohemoprotein A 403 Cupriavidus necator EC#: 1.14.12.17 IUBMB
Gene Name(s): hmp fhp PHG200
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
X89
Query on X89

A 1-[(2R)-2-[(2,4-dichlorobenzyl)oxy]-2-(2,4- dichlorophenyl)ethyl]-1H-imidazole
C18 H14 Cl4 N2 O
BYBLEWFAAKGYCD-SFHVURJKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
X89 N/A in BindingDB
Kd: 2600 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.185
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 121.34 α = 90.00
b = 105.28 β = 101.90
c = 46.44 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-27
  • Released Date: 2011-03-16
  • Deposition author(s): El Hammi, E., Warkentin, E., Demmer, U., Ermler, U., Baciou, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4