3OL6

Poliovirus polymerase elongation complex

Structural Biology Knowledgebase: 3OL6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.212

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3OL6

Classification: TRANSFERASE / RNA

Total Structure Weight: 279545.30


Macromolecule Entities
Molecule Chains Length Organism Details
Polymerase A, E, I, M 471 Enterovirus c EC#: 2.7.7.48 IUBMB
Fragment: UNP RESIDUES 1749-2209
Mutation: L446D
Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*GP*UP*CP*CP*GP*GP*AP*AP*A)-3') B, F, J, N 26 synthetic Template RNA
RNA (5'-R(*GP*CP*CP*CP*GP*GP*AP*CP*GP*AP*GP*AP*GP*A)-3') C, G, K, O 14 synthetic Product RNA
RNA (5'-R(*GP*GP*GP*AP*GP*AP*UP*GP*A)-3') D, H, L, P 9 synthetic Nontemplate RNA

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, E, I, M ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A, E, G, I, M ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.212
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 60.40 α = 83.72
b = 60.41 β = 83.69
c = 191.43 γ = 77.85

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-08-25
  • Released Date: 2010-12-22
  • Deposition author(s): Gong, P., Peersen, O.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4