Structure of sopB(155-272)-18mer complex, I23 form
DOI:10.2210/pdb3mkw/pdb   NDB ID: NA0507
Primary Citation
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 42214.14
    Molecule: DNA (5'-D(*CP*TP*GP*GP*GP*AP*CP*CP*AP*TP*GP*GP*TP*CP*CP*CP*AP*G)-3')
    Polymer: 1 Type: dna Length: 18
    Chains: T, U
    Fragment: 18 mer sopC repeat
    Details: 18-mer sopC repeat
    Molecule: Protein sopB
    Polymer: 2 Type: protein Length: 138
    Chains: B, P
    Fragment: SopB(UNP residues 155-272)
    Mutation: ASP:P.255, ASP:B.255
    Organism: Escherichia coli K-12
    Gene Names: sopB B ECOK12F047
    UniProtKB: Search PDB | P62558   Protein Feature View
  •   Structure Validation Hide

  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
  •   Related PDB Entries Hide
    Identifier Details
    3MKY   SopB(155-323)-18mer, I23 crystal form 
    3MKZ   SopB(155-272)-18mer complex, P21 form 
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SO4 O4 S
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA0507
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
Downloadable viewers:
  •   MyPDB Personal Annotations Hide
  •   Deposition Summary Hide
    Authors:   Schumacher, M.A.,  Piro, K.,  Xu, W.

    Deposition:   2010-04-15
    Release:   2010-05-05
    Last Modified (REVDAT):   2010-08-11
  •   Revision History    Hide
    Mouse over text for details
    Version format compliance
  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.99
    R-Value: 0.233 (obs.)
    R-Free: 0.268
    Space Group: I 2 3
    Unit Cell:
      Length [Å] Angles [°]
    a = 200.46 α = 90.00 
    b = 200.46 β = 90.00 
    c = 200.46 γ = 90.00