3JWO

Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility

Structural Biology Knowledgebase: 3JWO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.51 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.257

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3JWO

Classification: VIRAL PROTEIN

Total Structure Weight: 108919.95

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 GP120 ENVELOPE GLYCOPROTEIN A 357 Homo sapiens
T-cell surface glycoprotein CD4 C 184 Homo sapiens Gene Name(s): CD4 Gene View
FAB 48D LIGHT CHAIN L 209 Homo sapiens
FAB 48D Heavy CHAIN H 220 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FUL
Query on FUL

A BETA-L-FUCOSE
6-DEOXY-BETA-L-GALACTOSE (Synonym)
C6 H12 O5
SHZGCJCMOBCMKK-KGJVWPDLSA-N
Ligand Explorer
 
JSmol
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.51 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.257
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 190.00 α = 90.00
b = 190.00 β = 90.00
c = 103.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-09-18
  • Released Date: 2009-12-29
  • Deposition author(s): Pancera, M., Majeed, S., Huang, C.C., Kwon, Y.D., Zhou, T., Robinson, J.E., Sodroski, J., Wyatt, R., Kwong, P.D.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4