3II6

Structure of human Xrcc4 in complex with the tandem BRCT domains of DNA LigaseIV.

Structural Biology Knowledgebase: 3II6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.240

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3II6

Classification: LIGASE / DNA BINDING PROTEIN

Total Structure Weight: 154212.90

Macromolecule Entities
Molecule Chains Length Organism Details
DNA repair protein XRCC4 A, B, C, D 203 Homo sapiens Fragment: residues 1-203
Mutation: A60E, I134T
Gene Name(s): XRCC4 Gene View
DNA ligase 4 X, Y 263 Homo sapiens EC#: 6.5.1.1 IUBMB
Fragment: C-Terminal tandem BRCT domains, residues 654-911
Gene Name(s): LIG4 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

Y CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.280
  • R-Value Work: 0.240
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.24 α = 67.34
b = 85.98 β = 82.86
c = 111.61 γ = 74.52

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-07-31
  • Released Date: 2009-08-11
  • Deposition author(s): Meesala, S., Junop, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4