3FX8

Distinct recognition of three-way DNA junctions by a thioester variant of a metallo-supramolecular cylinder ('helicate')

Structural Biology Knowledgebase: 3FX8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.187

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3FX8

Classification: DNA

Total Structure Weight: 2821.60

Macromolecule Entities
Molecule Chains Length Organism Details
(5'-D(*CP*GP*TP*AP*CP*G)-3' C 6 synthetic Synthetic hexanucleotide

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5PM
Query on 5PM

C 4,4'-sulfanediylbis{N-[(1E)-pyridin-2-ylmethylidene]aniline}
1,1-Bis(N-(4-phenyl)-2-pyridylcarboxaldimine)thioether (Synonym)
C24 H18 N4 S
KHOHHSYBCGDFBZ-XUIWWLCJSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

C FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.187
  • Space Group: P 21 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.25 α = 90.00
b = 49.25 β = 90.00
c = 49.25 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2009-01-20
  • Released Date: 2010-03-16
  • Deposition author(s): Boer, D.R., Uson, I., Coll, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4