2YE9

HSP90 INHIBITORS AND DRUGS FROM FRAGMENT AND VIRTUAL SCREENING

Structural Biology Knowledgebase: 2YE9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.221

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2YE9

Classification: CHAPERONE

Total Structure Weight: 28921.54

Macromolecule Entities
Molecule Chains Length Organism Details
HEAT SHOCK PROTEIN HSP 90-ALPHA A 252 Homo sapiens Fragment: N-TERMINAL ATP-BINDING DOMAIN, RESIDUES 1-236
Gene Name(s): HSP90AA1 Gene View HSP90A HSPC1 HSPCA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2D4
Query on 2D4

A N-[4-HYDROXY-3-(2-HYDROXYNAPHTHALEN-1-YL)PHENYL]THIOPHENE- 2-SULFONAMIDE
C20 H15 N O4 S2
NYXDSXZBPWSAFA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
2D4 IC50: 600 nM (92) BindingDB

N/A in BindingMoad
IC50: 600 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.221
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.25 α = 90.00
b = 89.57 β = 90.00
c = 100.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-03-25
  • Released Date: 2011-06-15
  • Deposition author(s): Roughley, S.D., Hubbard, R.E., Baker, L.M.

Revision History

  • 2011-08-31
    Type: Citation | Details: JRNL
  • 2011-08-31
    Type: Version format compliance | Details: REMARK 4