2X6N

Human foamy virus integrase - catalytic core. Manganese-bound structure.

Structural Biology Knowledgebase: 2X6N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2X6N

Classification: VIRAL PROTEIN

Total Structure Weight: 135797.63

Macromolecule Entities
Molecule Chains Length Organism Details
INTEGRASE A, B, C..., D, E, FA, B, C, D, E, F 200 Simian foamy virus Fragment: CATALYTIC CORE, RESIDUES 861-1060
Mutation: I127M, K180R, I227M, L253M
Gene Name(s): pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, B, C, D, E, F MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.226
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 84.77 α = 90.00
b = 89.23 β = 90.00
c = 177.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-02-18
  • Released Date: 2010-08-11
  • Deposition author(s): Rety, S., Delelis, O., Rezabkova, L., Dubanchet, B., Silhan, J., Lewit-Bentley, A.

Revision History

  • 2012-04-18
    Type: Citation | Details: JRNL
  • 2012-04-18
    Type: Version format compliance | Details: REMARK 4