Staphylococcus aureus complement subversion protein Sbi-IV in complex with complement fragment C3d
2WY8
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Immune System
    Structure Weight: 44187.95
    Molecule: COMPLEMENT C3D FRAGMENT
    Polymer: 1 Type: protein Length: 310
    Chains: A
    Fragment: C3D, RESIDUES 996-1303
    Mutation: YES
    Organism: Homo sapiens
    Gene Names: Gene View for C3 CPAMD1
    UniProtKB: Protein Feature View | Search PDB | P01024  
    Molecule: IGG-BINDING PROTEIN
    Polymer: 2 Type: protein Length: 80
    Chains: Q
    Fragment: SBI-IV, RESIDUES 198-266
    Organism: Staphylococcus aureus
    Gene Name: SAHG_00235
    UniProtKB: Protein Feature View | Search PDB | C8LN82  
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Staphylococcus aureus   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1C3D   X-RAY CRYSTAL STRUCTURE OF C3D: A C3 FRAGMENT AND LIGAND FOR COMPLEMENT RECEPTOR 2 
    1GHQ   CR2-C3D COMPLEX STRUCTURE 
    1W2S   SOLUTION STRUCTURE OF CR2 SCR 1-2 IN ITS COMPLEX WITH C3D BY X-RAY SCATTERING 
    2A73   HUMAN COMPLEMENT COMPONENT C3 
    2A74   HUMAN COMPLEMENT COMPONENT C3C 
    2HR0   STRUCTURE OF COMPLEMENT C3B: INSIGHTS INTO COMPLEMENTACTIVATION AND REGULATION 
    2WII   COMPLEMENT C3B IN COMPLEX WITH FACTOR H DOMAINS 1-4 
    2WIN   C3 CONVERTASE (C3BBB) STABILIZED BY SCIN 
    2WY7   STAPHYLOCOCCUS AUREUS COMPLEMENT SUBVERSION PROTEIN SBI-IV IN COMPLEX WITH COMPLEMENT FRAGMENT C3D REVEALING AN ALTERNATIVE BINDING MODE 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL
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    GOL C3 H8 O3
    GLYCEROL
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Clark, E.A.,  Crennell, S.,  Upadhyay, A.,  Mackay, J.D.,  Bagby, S.,  van den Elsen, J.M.

    Deposition:   2009-11-13
    Release:   2010-12-01
    Last Modified (REVDAT):   2013-09-18
     
  •   Revision History    Hide
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    2013-09-18
    Biological assembly
    2013-09-18
    Version format compliance
    2013-09-18
    Non-polymer description
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.70
    R-Value: 0.171 (obs.)
    R-Free: 0.205
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 53.43 α = 90.00 
    b = 81.01 β = 90.00 
    c = 87.83 γ = 90.00