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CRYSTAL STRUCTURE OF HEPATITIS C VIRUS NS5B POLYMERASE FROM 1B GENOTYPE IN COMPLEX WITH A NON-NUCLEOSIDE INHIBITOR
2WHO
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 120326.46
    Molecule: RNA-DIRECTED RNA POLYMERASE
    Polymer: 1 Type: protein Length: 536
    Chains: A, B
    EC#: 2.7.7.48   
    Fragment: NS5B, RESIDUES 2420-2955
    Organism: Hepatitis C virus (isolate BK)
    UniProtKB: Protein Feature View | Search PDB | P26663  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Hepatitis c virus   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1A1Q  HEPATITIS C VIRUS NS3 PROTEINASE 
    1BT7  THE SOLUTION NMR STRUCTURE OF THE N- TERMINAL PROTEASEDOMAIN OF THE HEPATITIS C VIRUS (HCV) NS3-PROTEIN, FROM BKSTRAIN, 20 STRUCTURES 
    1C2P  HEPATITIS C VIRUS NS5B RIBONUCLEIC ACID- DEPENDENT RIBONUCLEIC ACID POLYMERASE 
    1CSJ  CRYSTAL STRUCTURE OF THE RIBONUCLEIC ACID- DEPENDENT RIBONUCLEIC ACID POLYMERASE OF HEPATITIS C VIRUS 
    1CU1  CRYSTAL STRUCTURE OF AN ENZYME COMPLEX FROM HEPATITIS C VIRUS 
    1GX5  HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH GTP AND MANGANESE 
    1GX6  HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH UTP AND MANGANESE 
    1JXP  BK STRAIN HEPATITIS C VIRUS (HCV) NS3-NS4A 
    1NHU  HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH NON-NUCLEOSIDE ANALOGUE INHIBITOR 
    1NHV  HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH NON-NUCLEOSIDE ANALOGUE INHIBITOR 
    1NS3  STRUCTURE OF HCV PROTEASE (BK STRAIN) 
    1OS5  CRYSTAL STRUCTURE OF HCV NS5B RNA POLYMERASE COMPLEXED WITHA NOVEL NON-COMPETITIVE INHIBITOR. 
    1QUV  CRYSTAL STRUCTURE OF THE RIBONUCLEIC ACID DIRECTED RIBONUCLEIC ACID POLYMERASE OF HEPATITIS C VIRUS 
    2AWZ  HEPATITIS C VIRUS NS5B RNA POLYMERASE IN COMPLEX WITH ACOVALENT INHIBITOR (5H) 
    2AX0  HEPATITIS C VIRUS NS5B RNA POLYMERASE IN COMPLEX WITH ACOVALENT INHIBITOR (5X) 
    2AX1  HEPATITIS C VIRUS NS5B RNA POLYMERASE IN COMPLEX WITH ACOVALENT INHIBITOR (5EE) 
    2BRK  CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH AN ALLOSTERIC INHIBITOR (COMPOUND 1) 
    2BRL  CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH AN ALLOSTERIC INHIBITOR (COMPOUND 2) 
    2I1R  NOVEL THIAZOLONES AS HCV NS5B POLYMERASE INHIBITORS:FURTHER DESIGNS, SYNTHESIS, SAR AND X-RAY COMPLEX STRUCTURE 
    2JC0  CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH INHIBITOR SB655264 
    2JC1  CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH INHIBITOR SB698223 
    2WCX  CRYSTAL STRUCTURE OF HEPATITIS C VIRUS NS5B POLYMERASE IN COMPLEX WITH THIENOPYRROLE- BASED FINGER-LOOP INHIBITORS 
    8OHM  CRYSTAL STRUCTURE OF RIBONUCLEIC ACID HELICASE FROM GENOTYPE 1B HEPATITIS C VIRUS: MECHANISM OF UNWINDING DUPLEX RIBONUCLEIC ACID 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MN
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    MN Mn
    MANGANESE (II) ION
    VGI
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    VGI C20 H15 Br N2 O3
    2-(3-BROMOPHENYL)-6-[(2-HYDROXYETHYL)AMINO]- 1H-BENZO[DE]ISOQUINOLINE-1,3(2H)-DIONE
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    VGI
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    VGI
    EC50: 7100 nM (100) - data from BindingDB  
    IC50: 20 - >1000 nM (88 - 99) - data from BindingDB  
    IC50: 20 nM - data from BindingMOAD  
    IC50: 20 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Di Marco, S.

    Deposition:   2009-05-05
    Release:   2009-08-11
    Last Modified (REVDAT):   2009-11-10
     
  •   Revision History    Hide
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.00
    R-Value: 0.213 (obs.)
    R-Free: 0.266
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 67.21 α = 90.00 
    b = 97.00 β = 90.00 
    c = 193.76 γ = 90.00