2WHO

CRYSTAL STRUCTURE OF HEPATITIS C VIRUS NS5B POLYMERASE FROM 1B GENOTYPE IN COMPLEX WITH A NON-NUCLEOSIDE INHIBITOR

Structural Biology Knowledgebase: 2WHO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2WHO

Classification: TRANSFERASE

Total Structure Weight: 120326.43

Macromolecule Entities
Molecule Chains Length Organism Details
RNA-DIRECTED RNA POLYMERASE A, B 536 Hepatitis c virus EC#: 2.7.7.48 IUBMB
Fragment: NS5B, RESIDUES 2420-2955
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
VGI
Query on VGI

A, B 2-(3-BROMOPHENYL)-6-[(2-HYDROXYETHYL)AMINO]- 1H-BENZO[DE]ISOQUINOLINE-1,3(2H)-DIONE
C20 H15 Br N2 O3
JZCUVYNOSDWORZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
VGI EC50: 7100 nM (100) BindingDB
IC50: 20 - >1000 nM (88 - 99) BindingDB

IC50: 20 nM  BindingMOAD
IC50: 20 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.211
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.21 α = 90.00
b = 97.00 β = 90.00
c = 193.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-05-05
  • Released Date: 2009-08-11
  • Deposition author(s): Di Marco, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4