Does a Fast Nuclear Magnetic Resonance Spectroscopy- and X-Ray Crystallography Hybrid Approach Provide Reliable Structural Information of Ligand-Protein Complexes? A Case Study of Metalloproteinases.
2W0D
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 76338.20
    Molecule: MACROPHAGE METALLOELASTASE
    Polymer: 1 Type: protein Length: 164
    Chains: A, B, C, D
    EC#: 3.4.24.65   
    Fragment: CATALYTIC DOMAIN, RESIDUES 106-263
    Mutation: YES
    Details: COMPOUND EXPRESSED WITH A 5XHIS TAG AT THE C-TERMINUS FOR CLONING/PURIFICATION PURPOSES
    Organism: Homo sapiens
    Gene Names: Gene View for MMP12 HME
    UniProtKB: Protein Feature View | Search PDB | P39900  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1JIZ   CRYSTAL STRUCTURE ANALYSIS OF HUMAN MACROPHAGE ELASTASE MMP-12 
    1JK3   CRYSTAL STRUCTURE OF HUMAN MMP-12 ( MACROPHAGE ELASTASE) ATTRUE ATOMIC RESOLUTION 
    1OS2   TERNARY ENZYME-PRODUCT-INHIBITOR COMPLEXES OF HUMAN MMP12 
    1OS9   BINARY ENZYME-PRODUCT COMPLEXES OF HUMAN MMP12 
    1RMZ   CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN MMP12COMPLEXED WITH THE INHIBITOR NNGH AT 1.3 A RESOLUTION 
    1ROS   CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO 2 -(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2- YL)ETHYL-4-(4-ETHOXY[1,1-BIPHENYL]-4- YL)-4-OXOBUTANOIC ACID 
    1UTT   CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO 2 -(1,3-DIOXO-1,3-DIHYDRO-2H-ISOINDOL-2- YL)ETHYL-4-(4-ETHOXY[1,1-BIPHENYL]-4- YL)-4-OXOBUTANOIC ACID 
    1UTZ   CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO ( 2R)-3-({[4-[(PYRIDIN-4-YL)PHENYL]-THIEN- 2-YL}CARBOXAMIDO)(PHENYL)PROPANOIC ACID 
    1Y93   CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN MMP12COMPLEXED WITH ACETOHYDROXAMIC ACID AT ATOMIC RESOLUTION 
    1YCM   SOLUTION STRUCTURE OF MATRIX METALLOPROTEINASE 12 (MMP12)IN THE PRESENCE OF N-ISOBUTYL- N-[4-METHOXYPHENYLSULFONYL]GLYCYL HYDROXAMIC ACID (NNGH) 
    1Z3J   SOLUTION STRUCTURE OF MMP12 IN THE PRESENCE OF N-ISOBUTYL-N-4-METHOXYPHENYLSULFONYL] GLYCYL HYDROXAMIC ACID (NNGH) 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ACT
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    ACT C2 H3 O2
    ACETATE ION
    CA
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    CA Ca
    CALCIUM ION
    CGS
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    CGS C18 H23 N3 O5 S
    N-HYDROXY-2(R)-[[(4-METHOXYPHENYL)SULFONYL](3- PICOLYL)AMINO]-3-METHYLBUTANAMIDE HYDROCHLORIDE
    CGS:2W0D
    CL
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    CL Cl
    CHLORIDE ION
    NA
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    NA Na
    SODIUM ION
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    CGS
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    CGS
    N/Ain BindingDB
    IC50: 2 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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