2VV3

hPPARgamma Ligand binding domain in complex with 4-oxoDHA

Structural Biology Knowledgebase: 2VV3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.225

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VV3

Classification: RECEPTOR

Total Structure Weight: 63244.09

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA A, B 276 Homo sapiens Fragment: LIGAND BINDING DOMAIN, RESIDUES 202-475
Details: 4-OXODHA
Gene Name(s): PPARG Gene View NR1C3

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4R8
Query on 4R8

A (6E,10Z,13Z,16Z,19Z)-4-oxodocosa-6,10,13,16,19- pentaenoic acid
4-OXODOCOSAHEXAENOIC ACID (Synonym)
C22 H32 O3
MTWLPOVQRMKOLI-IIFHDYRKSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.225
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 94.04 α = 90.00
b = 61.75 β = 103.18
c = 119.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-06-02
  • Released Date: 2008-08-19
  • Deposition author(s): Itoh, T., Fairall, L., Schwabe, J.W.R.

Revision History

  • 2012-06-06
    Type: Version format compliance | Details: REMARK 4
  • 2012-06-06
    Type: Refinement description | Details: REMARK 3
  • 2012-06-06
    Type: Source and taxonomy | Details: SOURCE
  • 2012-06-06
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2012-06-06
    Type: Geometry validation | Details: REMARK 500
  • 2012-06-06
    Type: Citation | Details: JRNL
  • 2012-06-06
    Type: Non-polymer description | Details: FORMUL
  • 2012-06-06
    Type: Other | Details: REMARK 525,REMARK 280