2VST

hPPARgamma Ligand binding domain in complex with 13-(S)-HODE

Structural Biology Knowledgebase: 2VST SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.234

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VST

Classification: RECEPTOR

Total Structure Weight: 63492.50

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA A, B 276 Homo sapiens Fragment: LIGAND BINDING DOMAIN, RESIDUES 202-475
Details: 13-(S)-HODE
Gene Name(s): PPARG Gene View NR1C3

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
243
Query on 243

A, B (9Z,11E,13S)-13-hydroxyoctadeca-9,11-dienoic acid
C18 H32 O3
HNICUWMFWZBIFP-IRQZEAMPSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.234
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.20 α = 90.00
b = 61.37 β = 102.73
c = 118.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-04-29
  • Released Date: 2008-08-19
  • Deposition author(s): Itoh, T., Fairall, L., Schwabe, J.W.R.

Revision History

  • 2012-06-06
    Type: Geometry validation | Details: REMARK 500
  • 2012-06-06
    Type: Citation | Details: JRNL
  • 2012-06-06
    Type: Non-polymer description | Details: FORMUL,HETNAM
  • 2012-06-06
    Type: Other | Details: REMARK 525
  • 2012-06-06
    Type: Version format compliance | Details: REMARK 4
  • 2012-06-06
    Type: Refinement description | Details: REMARK 3
  • 2012-06-06
    Type: Source and taxonomy | Details: SOURCE
  • 2012-06-06
    Type: Biological assembly | Details: REMARK 300,REMARK 350