2V1U

STRUCTURE OF THE AEROPYRUM PERNIX ORC1 PROTEIN IN COMPLEX WITH DNA

Structural Biology Knowledgebase: 2V1U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.254

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2V1U

Classification: REPLICATION

Total Structure Weight: 57459.14


Macromolecule Entities
Molecule Chains Length Organism Details
CELL DIVISION CONTROL PROTEIN 6 HOMOLOG A 387 Aeropyrum pernix Gene Name(s): orc1 APE_0475.1
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*CP*TP*CP*CP*AP*CP*AP*GP*GP *AP*AP*AP*CP*GP*GP*AP*GP*GP*GP*GP*T)-3' B 22 Aeropyrum pernix
5'-D(*AP*CP*CP*CP*CP*TP*CP*CP*GP*TP *TP*TP*CP*CP*TP*GP*TP*GP*GP*AP*GP*A)-3' C 22 Aeropyrum pernix

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.254
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 75.70 α = 90.00
b = 75.70 β = 90.00
c = 395.11 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-30
  • Released Date: 2007-09-18
  • Deposition author(s): Gaudier, M., Schuwirth, B.S., Westcott, S.L., Wigley, D.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor