STRUCTURE OF THE AEROPYRUM PERNIX ORC1 PROTEIN IN COMPLEX WITH DNA
DOI:10.2210/pdb2v1u/pdb   NDB ID: 2V1U
2V1U
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Replication
    Structure Weight: 57459.14
    Molecule: CELL DIVISION CONTROL PROTEIN 6 HOMOLOG
    Polymer: 1 Type: protein Length: 387
    Chains: A
    Organism: Aeropyrum pernix
    Gene Names: orc1 APE_0475.1
    UniProtKB: Protein Feature View | Search PDB | Q9YEV6  
    Molecule: 5'-D(*TP*CP*TP*CP*CP*AP*CP*AP*GP*GP *AP*AP*AP*CP*GP*GP*AP*GP*GP*GP*GP*T)-3'
    Polymer: 2 Type: dna Length: 22
    Chains: B
    Organism: Aeropyrum pernix
    Molecule: 5'-D(*AP*CP*CP*CP*CP*TP*CP*CP*GP*TP *TP*TP*CP*CP*TP*GP*TP*GP*GP*AP*GP*A)-3'
    Polymer: 3 Type: dna Length: 22
    Chains: C
    Organism: Aeropyrum pernix
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

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  •   Source Hide
    Polymer: 1
    Scientific Name: Aeropyrum pernix   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct (Aeropyrum pernix)   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct (Aeropyrum pernix)   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ADP
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    ADP C10 H15 N5 O10 P2
    ADENOSINE-5'-DIPHOSPHATE
    ADP:2V1U
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:2V1U
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Gaudier, M.,  Schuwirth, B.S.,  Westcott, S.L.,  Wigley, D.B.

    Deposition:   2007-05-30
    Release:   2007-09-18
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
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    2011-07-13
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.10
    R-Value: 0.257 (obs.)
    R-Free: 0.297
    Space Group: P 65 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 75.70 α = 90.00 
    b = 75.70 β = 90.00 
    c = 395.11 γ = 120.00