2UUE

REPLACE: A strategy for Iterative Design of Cyclin Binding Groove Inhibitors

Structural Biology Knowledgebase: 2UUE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2UUE

Classification: TRANSFERASE / INHIBITOR

Total Structure Weight: 129871.38

Macromolecule Entities
Molecule Chains Length Organism Details
CELL DIVISION PROTEIN KINASE 2 A, C 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Details: TRIAZOL-1-METHYL-PYRIMIDIN INHIBITOR
Gene Name(s): CDK2 Gene View CDKN2
CYCLIN A2 B, D 259 Homo sapiens Fragment: RESIDUES 174-432
Gene Name(s): CCNA2 Gene View CCN1 CCNA
GVC-TETRAPEPTIDE INHIBITOR E, F 5 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MTZ
Query on MTZ

A, C 4-METHYL-5-{(2E)-2-[(4-MORPHOLIN-4-YLPHENYL)IMINO]- 2,5-DIHYDROPYRIMIDIN-4-YL}-1,3-THIAZOL-2- AMINE
C18 H20 N6 O S
RPSZSAKYXPWBRR-PYCFMQQDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GVC
Query on GVC

E, F 1-(3,5-DICHLOROPHENYL)-5-METHYL-1H-1,2,4- TRIAZOLE-3-CARBOXYLIC ACID
C10 H7 Cl2 N3 O2
CZTNDZALWLHXBA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MTZ N/A in BindingDB
N/A in BindingMoad
IC50: 740 nM  PDBbind
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
PFF
Query on PFF
E, F L-PEPTIDE LINKING C9 H10 F N O2 PHE
NH2
Query on NH2
E, F NON-POLYMER H2 N --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.196
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.56 α = 90.00
b = 113.80 β = 90.00
c = 155.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-03-02
  • Released Date: 2007-03-27
  • Deposition author(s): Andrews, M.J., Kontopidis, G., Mcinnes, C., Plater, A., Innes, L., Cowan, A., Jewsbury, P., Fischer, P.M.
  • Previous versions: 2C5T

Revision History

  • 2012-09-05
    Type: Non-polymer description | Details: FORMUL
  • 2012-09-05
    Type: Other | Details: REMARK 525,HEADER
  • 2012-09-05
    Type: Geometry validation | Details: REMARK 500
  • 2012-09-05
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2012-09-05
    Type: Version format compliance | Details: REMARK 4