2PRG

LIGAND-BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA

Structural Biology Knowledgebase: 2PRG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2PRG

Classification: COMPLEX (THIAZOLIDINEDIONE / RECEPTOR)

Total Structure Weight: 72105.75

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA A, B 271 Homo sapiens Fragment: LBD (LIGAND BINDING DOMAIN), RESIDUES 207-477
Gene Name(s): PPARG Gene View NR1C3
NUCLEAR RECEPTOR COACTIVATOR SRC-1 C 88 Homo sapiens EC#: 2.3.1.48 IUBMB
Fragment: FRAGMENT CONTAINING HD1 & HD2 RESIDUES 628-703
Details: COMPLEX WITH ROSIGLITAZONE (BRL-49653) REGISTRY # 122320-73-4
Gene Name(s): NCOA1 Gene View BHLHE74 SRC1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BRL
Query on BRL

A, B 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL- 2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)
BRL49653; ROSIGLITAZONE (Synonym)
C18 H19 N3 O3 S
YASAKCUCGLMORW-HNNXBMFYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BRL EC50: 2.4 - 2880 nM (98 - 100) BindingDB
IC50: 30 - 2000 nM (100) BindingDB
Kd: 7 - 4980 nM (100) BindingDB
Ki: 8 - 440 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.207
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 52.21 α = 90.00
b = 69.06 β = 90.00
c = 177.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-08-14
  • Released Date: 1999-07-19
  • Deposition author(s): Nolte, R.T., Wisely, G.B., Milburn, M.V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4