Human Adenovirus type 11 knob in complex with domains SCR1 and SCR2 of CD46 (membrane cofactor protein, MCP)
2O39
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Viral Protein/immune System
    Structure Weight: 74422.13
    Molecule: Fiber protein
    Polymer: 1 Type: protein Length: 197
    Chains: A, B
    Fragment: residues 129-325
    Organism: Human adenovirus 11p
    Gene Name: L5
    UniProtKB: Protein Feature View | Search PDB | P35774  
    Molecule: Membrane cofactor protein
    Polymer: 2 Type: protein Length: 126
    Chains: C, D
    Fragment: SCR1 and SCR 2 domains
    Organism: Homo sapiens
    Gene Names: Gene View for CD46 MCP MIC10
    UniProtKB: Protein Feature View | Search PDB | P15529  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Human adenovirus 11p   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Cricetulus griseus  
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1CKL   N-TERMINAL TWO DOMAINS OF HUMAN CD46 (MEMBRANE COFACTOR PROTEIN, MCP) 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    BMA
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    BMA C6 H12 O6
    BETA-D-MANNOSE
    CA
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    CA Ca
    CALCIUM ION
    NAG
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    NAG C8 H15 N O6
    N-ACETYL-D-GLUCOSAMINE
    NAG:2O39
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Persson, D.B.,  Reiter, D.M.,  Arnberg, N.,  Stehle, T.

    Deposition:   2006-12-01
    Release:   2007-01-09
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
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    2011-07-13
    Non-polymer description
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.85
    R-Value: 0.238 (obs.)
    R-Free: 0.273
    Space Group: P 3
    Unit Cell:
      Length [Å] Angles [°]
    a = 106.14 α = 90.00 
    b = 106.14 β = 90.00 
    c = 68.32 γ = 120.00