HIV-1 gp120 Envelope Glycoprotein (I109C, T257S, S334A, S375W, Q428C) Complexed with CD4 and Antibody 17b
2NY1
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Viral Protein/immune System
    Structure Weight: 106807.34
    Molecule: ENVELOPE GLYCOPROTEIN GP120
    Polymer: 1 Type: protein Length: 317
    Chains: A
    Fragment: CORE
    Mutation: I109C, T257S, S334A, S375W, Q428C
    Organism: Human immunodeficiency virus 1
    Gene Name: env
    UniProtKB: Protein Feature View | Search PDB | Q993A8  
    Molecule: T-cell surface glycoprotein CD4
    Polymer: 2 Type: protein Length: 184
    Chains: B
    Fragment: D1D2, N-TERMINAL TWO DOMAIN FRAGMENT
    Organism: Homo sapiens
    Gene Name: Gene View for CD4
    UniProtKB: Protein Feature View | Search PDB | P01730  
    Molecule: ANTIBODY 17B, LIGHT CHAIN
    Polymer: 3 Type: protein Length: 214
    Chains: C
    Fragment: ANTIGEN-BINDING FRAGMENT, FAB
    Organism: Homo sapiens
    Gene Name: IGK@
    UniProtKB: Protein Feature View | Search PDB | Q6P5S8  
    Molecule: ANTIBODY 17B, HEAVY CHAIN
    Polymer: 4 Type: protein Length: 229
    Chains: D
    Fragment: ANTIGEN-BINDING FRAGMENT, FAB
    Organism: Homo sapiens
    Gene Name: DKFZp686I15212
    UniProtKB: Protein Feature View | Search PDB | Q6N030  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Homo sapiens  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Homo sapiens  
    Polymer: 4
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Homo sapiens  
     
  •   Related PDB Entries Hide
    Identifier Details
    1GC1   The same ternary complex at 2.5 A 
    1RZJ   The same ternary complex at 2.2 A 
    1RZK   The same ternary complex from a primary isolate 
    2NXY    
    2NXZ    
    2NY0    
    2NY2    
    2NY3    
    2NY4    
    2NY5    
    2NY6    
    2NY7    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NAG
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    NAG C8 H15 N O6
    N-ACETYL-D-GLUCOSAMINE
    SUC
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    SUC C12 H22 O11
    SUCROSE
    SUC:2NY1
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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