NMR Ensemble

2M3Z

NMR solution structure of HIV-1 nucleocapsid protein in complex with an inhibitor displaying a 2 inhibitors:1 NC stoichiometry

Structural Biology Knowledgebase: 2M3Z SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 10
  • Selection Criteria: Structures with the Least Restraint Violations

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2M3Z

Classification: VIRAL PROTEIN

Total Structure Weight: 7336.04

Macromolecule Entities
Molecule Chains Length Organism Details
NUCLEOCAPSID PROTEIN P7 A 55 Human immunodeficiency virus 1 Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1HF
Query on 1HF

A (3E)-3-{(2Z)-[(5Z)-5-(furan-2-ylmethylidene)- 4-oxo-1,3-thiazolidin-2-ylidene]hydrazinylidene}- 2-oxo-2,3-dihydro-1H-indole-5-sulfonic acid
C16 H10 N4 O6 S2
DBUSJFAIUHYMER-SDQBBNPISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1HF N/A in BindingDB
N/A in BindingMoad
Kd: 270 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 10
  • Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-28
  • Released Date: 2013-02-27
  • Deposition author(s): Goudreau, N., Hucke, O.

Revision History

  • 2013-05-29
    Type: Citation | Details: Citation update
  • 2013-03-27
    Type: Citation | Details: Citation update