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Crystal structure of EGFR kinase domain T790M mutation in compex with HKI-272
2JIV
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 76032.24
    Molecule: EPIDERMAL GROWTH FACTOR RECEPTOR
    Polymer: 1 Type: protein Length: 328
    Chains: A, B
    EC#: 2.7.10.1   
    Fragment: KINASE DOMAIN, RESIDUES 695-1022
    Mutation: YES
    Details: EGFR 696-1022 T790M
    Organism: Homo sapiens
    Gene Names: Gene View for EGFR ERBB ERBB1 HER1
    UniProtKB: Protein Feature View | Search PDB | P00533  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Spodoptera frugiperda  
     
  •   Related PDB Entries Hide
    Identifier Details
    1DNQ  THEORETICAL MODEL OF THE FIRST AND SECOND DOMAINS OF THE HUMAN EPIDERMAL GROWTH FACTOR RECEPTOR ECTODOMAIN 
    1DNR  THEORETICAL MODEL OF THE THIRD AND FOURTH DOMAINS OF THE HUMAN EPIDERMAL GROWTH FACTOR RECEPTOR ECTODOMAIN 
    1IVO  CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN EPIDERMAL GROWTHFACTOR AND RECEPTOR EXTRACELLULAR DOMAINS. 
    1M14  TYROSINE KINASE DOMAIN FROM EPIDERMAL GROWTH FACTOR RECEPTOR 
    1M17  EPIDERMAL GROWTH FACTOR RECEPTOR TYROSINE KINASE DOMAINWITH 4-ANILINOQUINAZOLINE INHIBITOR ERLOTINIB 
    1MOX  CRYSTAL STRUCTURE OF HUMAN EPIDERMAL GROWTH FACTOR RECEPTOR(RESIDUES 1-501) IN COMPLEX WITH TGF-ALPHA 
    1NQL  STRUCTURE OF THE EXTRACELLULAR DOMAIN OF HUMAN EPIDERMALGROWTH FACTOR (EGF) RECEPTOR IN AN INACTIVE (LOW PH)COMPLEX WITH EGF. 
    1XKK  EGFR KINASE DOMAIN COMPLEXED WITH A QUINAZOLINE INHIBITOR-GW572016 
    1YY9  STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE EPIDERMALGROWTH FACTOR RECEPTOR IN COMPLEX WITH THE FAB FRAGMENT OFCETUXIMAB/ERBITUX/ IMC-C225 
    1Z9I  A STRUCTURAL MODEL FOR THE MEMBRANE-BOUND FORM OF THEJUXTAMEMBRANE DOMAIN OF THE EPIDERMAL GROWTH FACTORRECEPTOR 
    2GS2  CRYSTAL STRUCTURE OF THE ACTIVE EGFR KINASE DOMAIN 
    2GS7  CRYSTAL STRUCTURE OF THE INACTIVE EGFR KINASE DOMAIN INCOMPLEX WITH AMP-PNP 
    2ITN  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX WITH AMP-PNP 
    2ITO  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX WITH IRESSA 
    2ITP  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX WITH AEE788 
    2ITQ  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN G719S MUTATION IN COMPLEX WITH AFN941 
    2ITT  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX WITH AEE788 
    2ITU  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX WITH AFN941 
    2ITV  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX WITH AMP-PNP 
    2ITW  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AFN941 
    2ITX  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AMP-PNP 
    2ITY  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH IRESSA 
    2ITZ  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN L858R MUTATION IN COMPLEX WITH IRESSA 
    2J5E  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AN IRREVERSIBLE INHIBITOR 13- JAB 
    2J5F  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AN IRREVERSIBLE INHIBITOR 34- JAB 
    2J6M  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN IN COMPLEX WITH AEE788 
    2JIT  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN T790M MUTATION 
    2JIU  CRYSTAL STRUCTURE OF EGFR KINASE DOMAIN T790M MUTATION IN COMPLEX AEE788 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CL
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    CL Cl
    CHLORIDE ION
    HKI
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    HKI C30 H31 Cl N6 O3
    N-(4-{[3-chloro-4-(pyridin-2-ylmethoxy)phenyl]amino}- 3-cyano-7-ethoxyquinolin-6-yl)-4-(dimethylamino)butanamide
    HKI:2JIV
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Yun, C.-H.,  Mengwasser, K.E.,  Toms, A.V.,  Li, Y.,  Woo, M.S.,  Greulich, H.,  Wong, K.-K.,  Meyerson, M.,  Eck, M.J.

    Deposition:   2007-07-02
    Release:   2008-01-22
    Last Modified (REVDAT):   2014-01-29
     
  •   Revision History    Hide
    Mouse over text for details
    2014-01-29
    Linkage
    2014-01-29
    Biological assembly
    2014-01-29
    Atom nomenclature
    2014-01-29
    Other
    2014-01-29
    Citation
    2014-01-29
    Function and keywords
    2014-01-29
    Version format compliance
    2014-01-29
    Geometry validation
    2014-01-29
    Non-polymer description
    2014-01-29
    Binding sites and description
    2014-01-29
    Source and taxonomy
    2014-01-29
    Entry authorship
    2014-01-29
    Polymer description
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.50
    R-Value: 0.253 (obs.)
    R-Free: 0.284
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 56.09 α = 90.00 
    b = 98.99 β = 109.94 
    c = 73.33 γ = 90.00