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The origin binding domain of the SV40 large T antigen bound to the functional pen palindrome DNA (23 bp)
DOI:10.2210/pdb2itl/pdb   NDB ID: PD0882
2ITL
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 45517.18
    Molecule: 24-nt PEN element of the SV40 DNA origin
    Polymer: 1 Type: dna Length: 24
    Chains: W
    Molecule: 24-nt PEN element of the SV40 DNA origin
    Polymer: 2 Type: dna Length: 24
    Chains: C
    Molecule: large T antigen
    Polymer: 3 Type: protein Length: 133
    Chains: A, B
    Fragment: Origin binding domain (residues 131-259)
    Organism: Simian virus 40
    UniProtKB: Protein Feature View | Search PDB | Q98ZP7  
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Simian virus 40   Taxonomy   Expression System: Escherichia coli bl21(de3)  
     
  •   Related PDB Entries Hide
    Identifier Details
    2IPR   
    2ITJ   
    2NL8   
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0882
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Bochkareva, E.,  Seitova, A,  Bochkarev, A.

    Deposition:   2006-10-19
    Release:   2006-12-12
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.65
    R-Value: 0.204 (obs.)
    R-Free: 0.251
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 83.20 α = 90.00 
    b = 64.10 β = 120.69 
    c = 79.18 γ = 90.00