2ID0

Escherichia coli RNase II

Structural Biology Knowledgebase: 2ID0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.223

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2ID0

Classification: HYDROLASE

Total Structure Weight: 293391.35

Macromolecule Entities
Molecule Chains Length Organism Details
Exoribonuclease 2 A, B, C, D 644 Escherichia coli EC#: 3.1.13.1 IUBMB
Mutation: M1M, M51M, M55M, M132M, M182M, M208M, M261M, M286M, M393M, M417M, M505M, M531M, M540M, M576M, M633M
Gene Name(s): rnb b1286 JW1279

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A, B, C, D MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.223
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.76 α = 107.80
b = 118.43 β = 98.36
c = 122.38 γ = 91.40

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-13
  • Released Date: 2006-10-03
  • Deposition author(s): Zuo, Y., Zhang, J., Wang, Y., Malhotra, A.

Revision History

  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor