2ICF

CRIg bound to C3b

Structural Biology Knowledgebase: 2ICF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.1 Å
  • R-Value Free: 0.330
  • R-Value Work: 0.252

Literature

Macromolecules
Sequence Display for 2ICF

Classification: IMMUNE SYSTEM

Total Structure Weight: 189756.14

Macromolecule Entities
Molecule Chains Length Organism Details
Complement C3 beta chain A 642 Homo sapiens Gene Name(s): C3 Gene View CPAMD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Complement C3 alpha chain B 915 Homo sapiens Gene Name(s): C3 Gene View CPAMD1
V-set and immunoglobulin domain-containing protein 4 S 119 Homo sapiens Gene Name(s): VSIG4 Gene View CRIg Z39IG UNQ317/PRO362
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.1 Å
  • R-Value Free: 0.330
  • R-Value Work: 0.252
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 97.61 α = 90.00
b = 255.75 β = 90.00
c = 180.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-12
  • Released Date: 2006-11-07
  • Deposition author(s): Wiesmann, C.

Revision History

  • 2013-09-18
    Type: Biological assembly | Details: --
  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor