Crystal structure of the ligand binding domain of the Vitamin D nuclear receptor in complex with Gemini and a coactivator peptide
2HCD
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  •   Molecular Description Hide
    Classification: Gene Regulation
    Structure Weight: 36339.76
    Molecule: Vitamin D receptor
    Polymer: 1 Type: protein Length: 302
    Chains: A
    Fragment: Ligand binding domain
    Organism: Danio rerio
    Gene Names: vdra nr1i1a vdr
    UniProtKB: Protein Feature View | Search PDB | Q9PTN2  
    Molecule: SRC-1 from Nuclear receptor coactivator 1
    Polymer: 2 Type: protein Length: 15
    Chains: B
    EC#: 2.3.1.48   
    Organism: Homo sapiens
    Gene Names: Gene View for NCOA1 BHLHE74 SRC1
    UniProtKB: Protein Feature View | Search PDB | Q15788  
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Danio rerio   Taxonomy   Common Name: Zebrafish Expression System: Escherichia coli bl21(de3)  
    Polymer: 2
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1DB1    
    2HBH    
    2HC4    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    BIV
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    BIV C32 H54 O4
    21-NOR-9,10-SECOCHOLESTA-5,7,10(19)-TRIENE- 1,3,25-TRIOL, 20-(4-HYDROXY-4-METHYLPENTYL)- , (1A,3B,5Z,7E)
    BIV:2HCD
     
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Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Ciesielski, F.,  Rochel, N.,  Moras, D.

    Deposition:   2006-06-16
    Release:   2007-05-01
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.60
    R-Value: 0.227 (obs.)
    R-Free: 0.260
    Space Group: P 65 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 65.86 α = 90.00 
    b = 65.86 β = 90.00 
    c = 265.02 γ = 120.00