Crystal structure of the ligand binding domain of the Vitamin D nuclear receptor in complex with Gemini and a coactivator peptide
Primary Citation
  •   Molecular Description Hide
    Classification: Gene Regulation
    Structure Weight: 36339.76
    Molecule: Vitamin D receptor
    Polymer: 1 Type: protein Length: 302
    Chains: A
    Fragment: Ligand binding domain
    Organism: Danio rerio
    Gene Names: vdra nr1i1a vdr
    UniProtKB: Search PDB | Q9PTN2   Protein Feature View
    Molecule: SRC-1 from Nuclear receptor coactivator 1
    Polymer: 2 Type: protein Length: 15
    Chains: B
    Organism: Homo sapiens
    Gene Names: BHLHE74 SRC1 Gene View for NCOA1
    UniProtKB: Search PDB | Q15788   Protein Feature View
  •   Structure Validation Hide

  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Danio rerio   Taxonomy   Common Name: Zebrafish Expression System: Escherichia coli bl21(de3)  
    Polymer: 2
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
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    Identifier Details
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    BIV C32 H54 O4
    21-NOR-9,10-SECOCHOLESTA-5,7,10(19)-TRIENE- 1,3,25-TRIOL, 20-(4-HYDROXY-4-METHYLPENTYL)- , (1A,3B,5Z,7E)
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  •   Structural Biology Knowledgebase Data Hide
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Ciesielski, F.,  Rochel, N.,  Moras, D.

    Deposition:   2006-06-16
    Release:   2007-05-01
    Last Modified (REVDAT):   2009-02-24
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.60
    R-Value: 0.227 (obs.)
    R-Free: 0.260
    Space Group: P 65 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 65.86 α = 90.00 
    b = 65.86 β = 90.00 
    c = 265.02 γ = 120.00