2FUF

Crystal structure of the SV40 large T antigen origin-binding domain

Structural Biology Knowledgebase: 2FUF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.169

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2FUF

Classification: DNA BINDING PROTEIN

Total Structure Weight: 15697.70

Macromolecule Entities
Molecule Chains Length Organism Details
Large T antigen A 134 Simian virus 40 EC#: 3.6.4 IUBMB
Fragment: DNA binding domain (residues 131-259)
Mutation: M176M, M232M

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FLC
Query on FLC

A CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.169
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 83.67 α = 90.00
b = 83.67 β = 90.00
c = 35.88 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-26
  • Released Date: 2006-08-22
  • Deposition author(s): Meinke, G., Bullock, P.A., Bohm, A.

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4