POP-OUT | CLOSE
 
Crystal structure of the ligand binding domain of human PPAR-gamma in complex with an agonist
2F4B
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription Activator
    Structure Weight: 62516.21
    Molecule: Peroxisome proliferator-activated receptor gamma
    Polymer: 1 Type: protein Length: 271
    Chains: A, B
    Fragment: LIGAND BINDING DOMAIN
    Organism: Homo sapiens
    Gene Names: Gene View for PPARG NR1C3
    UniProtKB: Protein Feature View | Search PDB | P37231  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    EHA
    Search 
    Download 
    EHA C33 H31 N O5
    (5-{3-[(6-BENZOYL-1-PROPYL-2-NAPHTHYL)OXY]PROPOXY}- 1H-INDOL-1-YL)ACETIC ACID
    EHA:2F4B
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    EHA
    Search 
    Download 
    EHA
    EC50: 70 nM (100) - data from BindingDB  
    IC50: 50 nM (100) - data from BindingDB  
    IC50: 50 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Lu, I.L.,  Peng, Y.H.,  Mahindroo, N.,  Hsieh, H.P.,  Wu, S.Y.

    Deposition:   2005-11-23
    Release:   2006-02-14
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.07
    R-Value: 0.222 (obs.)
    R-Free: 0.288
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 55.97 α = 90.00 
    b = 88.64 β = 90.01 
    c = 57.88 γ = 90.00