2EXM

Human CDK2 in complex with isopentenyladenine


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 2EXM

Classification: TRANSFERASE

Total Structure Weight: 34179.73

Macromolecule Entities
Molecule Chains Length Organism Details
Cell division protein kinase 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZIP
Query on ZIP

A N-(3-METHYLBUT-2-EN-1-YL)-9H-PURIN-6-AMINE
ISOPENTENYLADENINE (Synonym)
C10 H13 N5
HYVABZIGRDEKCD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ZIP N/A in BindingDB
N/A in BindingMoad
Ki: 78000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.200
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 73.25 α = 90.00
b = 72.51 β = 90.00
c = 54.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-11-08
  • Released Date: 2005-12-27
  • Deposition author(s): Schulze-Gahmen, U.

Revision History

  • Version 1_0: 2005-12-27

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description