2E9R

Foot-and-mouth disease virus RNA-dependent RNA polymerase in complex with a template-primer RNA and with ribavirin

Structural Biology Knowledgebase: 2E9R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.243

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2E9R

Classification: TRANSFERASE / RNA

Total Structure Weight: 58748.76


Macromolecule Entities
Molecule Chains Length Organism Details
RNA-dependent RNA polymerase X 476 Foot-and-mouth disease virus EC#: 2.7.7.48 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*CP*AP*UP*GP*GP*GP*CP*CP*C)-3' A 9 synthetic RNA template
5'-R(*CP*CP*C*GP*GP*GP*CP*CP*C)-3' B 6 synthetic RNA primer

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RTP
Query on RTP

X RIBAVIRIN TRIPHOSPHATE
C8 H15 N4 O14 P3
MMJOCKKLRMRSEQ-AFCXAGJDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

X MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.81 Å
  • R-Value Free: 0.296
  • R-Value Work: 0.243
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 94.09 α = 90.00
b = 94.09 β = 90.00
c = 99.29 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-26
  • Released Date: 2007-06-26
  • Deposition author(s): Ferrer-Orta, C., Arias, A., Perez-Luque, R., Escarmis, C., Domingo, E., Verdaguer, N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4