2D01

Wild Type Photoactive Yellow Protein, P65 Form

Structural Biology Knowledgebase: 2D01 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.34 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.152

Literature

Macromolecules
Sequence Display for 2D01

Classification: SIGNALING PROTEIN

Total Structure Weight: 14052.84

Macromolecule Entities
Molecule Chains Length Organism Details
Photoactive yellow protein A 125 Halorhodospira halophila Gene Name(s): pyp
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HC4
Query on HC4

A 4'-HYDROXYCINNAMIC ACID
PARA-COUMARIC ACID (Synonym)
C9 H8 O3
NGSWKAQJJWESNS-ZZXKWVIFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.34 Å
  • R-Value Free: 0.189
  • R-Value Work: 0.152
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.42 α = 90.00
b = 40.42 β = 90.00
c = 118.13 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-07-21
  • Released Date: 2006-04-04
  • Deposition author(s): Shimizu, N., Kamikubo, H., Yamazaki, Y., Imamoto, Y., Kataoka, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4