2BRL

CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH AN ALLOSTERIC INHIBITOR (COMPOUND 2)

Structural Biology Knowledgebase: 2BRL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.189

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2BRL

Classification: TRANSFERASE

Total Structure Weight: 60253.63

Macromolecule Entities
Molecule Chains Length Organism Details
RNA-DIRECTED RNA POLYMERASE A 536 Hepatitis c virus EC#: 2.7.7.48 IUBMB
Fragment: NS5B CATALYTIC DOMAIN, RESIDUES 2420-2955
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
POO
Query on POO

A 3-CYCLOHEXYL-1-(2-{METHYL[(1-METHYLPIPERIDIN- 3-YL)METHYL]AMINO}-2-OXOETHYL)-2-PHENYL-1H- INDOLE-6-CARBOXYLIC ACID
C31 H39 N3 O3
AWVLDLUQVKNAMT-JOCHJYFZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.189
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.30 α = 90.00
b = 94.85 β = 90.00
c = 96.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-05-06
  • Released Date: 2005-06-14
  • Deposition author(s): Di Marco, S., Volpari, C., Carfi, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4