CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH AN ALLOSTERIC INHIBITOR (COMPOUND 1)
2BRK
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 60198.52
    Molecule: RNA-DIRECTED RNA POLYMERASE
    Polymer: 1 Type: protein Length: 536
    Chains: A
    EC#: 2.7.7.48   
    Fragment: NS5B CATALYTIC DOMAIN, RESIDUES 2420-2955
    Organism: Hepatitis C virus
    UniProtKB: Protein Feature View | Search PDB | P26663  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Hepatitis c virus   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1A1Q   HEPATITIS C VIRUS NS3 PROTEINASE 
    1C2P   HEPATITIS C VIRUS NS5B RIBONUCLEIC ACID- DEPENDENT RIBONUCLEIC ACID POLYMERASE 
    1CSJ   CRYSTAL STRUCTURE OF THE RIBONUCLEIC ACID- DEPENDENT RIBONUCLEIC ACID POLYMERASE OF HEPATITIS C VIRUS 
    1CU1   CRYSTAL STRUCTURE OF AN ENZYME COMPLEX FROM HEPATITIS C VIRUS 
    1GX5   HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH GTP AND MANGANESE 
    1GX6   HEPATITIS C VIRUS RNA POLYMERASE IN COMPLEX WITH UTP AND MANGANESE 
    1JXP   BK STRAIN HEPATITIS C VIRUS (HCV) NS3-NS4A 
    1NS3   STRUCTURE OF HCV PROTEASE (BK STRAIN) 
    1QUV   CRYSTAL STRUCTURE OF THE RIBONUCLEIC ACID DIRECTED RIBONUCLEIC ACID POLYMERASE OF HEPATITIS C VIRUS 
    2BRL   CRYSTAL STRUCTURE OF HEPATITIS C VIRUS POLYMERASE IN COMPLEX WITH AN ALLOSTERIC INHIBITOR (COMPOUND 2) 
    8OHM   CRYSTAL STRUCTURE OF RIBONUCLEIC ACID HELICASE FROM GENOTYPE 1B HEPATITIS C VIRUS: MECHANISM OF UNWINDING DUPLEX RIBONUCLEIC ACID 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CMF
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    CMF C27 H30 N2 O4
    3-CYCLOHEXYL-1-(2-MORPHOLIN-4-YL-2-OXOETHYL)- 2-PHENYL-1H-INDOLE-6-CARBOXYLIC ACID
    CMF:2BRK
    MN
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    MN Mn
    MANGANESE (II) ION
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    CMF
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    CMF
    EC50: 0.8 nM (88) - data from BindingDB  
    IC50: 26 nM (88) - data from BindingDB  
    N/Ain BindingMoad
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PQS (software)
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  •   Deposition Summary Hide
    Authors:   Di Marco, S.,  Volpari, C.,  Carfi, A.

    Deposition:   2005-05-06
    Release:   2005-06-14
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.30
    R-Value: 0.187 (obs.)
    R-Free: 0.245
    Space Group: P 21 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 68.00 α = 90.00 
    b = 94.49 β = 90.00 
    c = 95.73 γ = 90.00