2AX1

Hepatitis C Virus NS5b RNA Polymerase in complex with a covalent inhibitor (5ee)

Structural Biology Knowledgebase: 2AX1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.202

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2AX1

Classification: TRANSFERASE

Total Structure Weight: 130952.51

Macromolecule Entities
Molecule Chains Length Organism Details
Genome polyprotein A, B 580 Hepatitis c virus EC#: 2.7.7.48 IUBMB
Fragment: NS5B RNA-directed RNA polymerase
Mutation: V499A, S506N, Q514R, T520I, P540A, S543G, G549S, V552T, S563G, L564V, R566H
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
5EE
Query on 5EE

A, B 5R-(3,4-DICHLOROPHENYLMETHYL)-3-(2-THIOPHENESULFONYLAMINO)- 4-OXO-2-THIONOTHIAZOLIDINE
C14 H10 Cl2 N2 O3 S4
GAOOBYJHWAKZKU-LLVKDONJSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.202
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 87.01 α = 90.00
b = 86.77 β = 90.00
c = 162.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-09-02
  • Released Date: 2006-01-24
  • Deposition author(s): Powers, J.P., Piper, D.E., Li, Y., Mayorga, V., Anzola, J., Chen, J.M., Jaen, J.C., Lee, G., Liu, J., Peterson, M.G., Tonn, G.R., Ye, Q., Walker, N.P., Wang, Z.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4