1YKY

Effect of alcohols on protein hydration

Structural Biology Knowledgebase: 1YKY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1YKY

Classification: HYDROLASE

Total Structure Weight: 14537.89

Macromolecule Entities
Molecule Chains Length Organism Details
Lysozyme C X 129 Gallus gallus EC#: 3.2.1.17 IUBMB
Gene Name(s): LYZ Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1BO
Query on 1BO

X 1-BUTANOL
BUTAN-1-OL (Synonym)
C4 H10 O
LRHPLDYGYMQRHN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

X CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

X SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.185
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 79.29 α = 90.00
b = 79.29 β = 90.00
c = 37.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-01-18
  • Released Date: 2005-07-05
  • Deposition author(s): Deshpande, A., Nimsadkar, S., Mande, S.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4