1XR1

Crystal structure of hPim-1 kinase in complex with AMP-PNP at 2.1 A Resolution

Structural Biology Knowledgebase: 1XR1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.267

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1XR1

Classification: transferase

Total Structure Weight: 34807.02

Macromolecule Entities
Molecule Chains Length Organism Details
Proto-oncogene serine/threonine-protein kinase Pim-1 A 300 Homo sapiens EC#: 2.7.11.1 IUBMB
Gene Name(s): PIM1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.301
  • R-Value Work: 0.267
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 96.68 α = 90.00
b = 96.68 β = 90.00
c = 80.02 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-10-13
  • Released Date: 2004-11-09
  • Deposition author(s): Qian, K.C., Wang, L., Hickey, E.R., Studts, J., Barringer, K., Peng, C., Kronkaitis, A., Li, J., White, A., Mische, S., Farmer, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4