1UTZ

CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO (2R)-3-({[4-[(PYRI DIN-4-YL)PHENYL]-THIEN-2-YL}CARBOXAMIDO)(PHENYL)PROPANOIC ACID

Structural Biology Knowledgebase: 1UTZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1UTZ

Classification: HYDROLASE

Total Structure Weight: 37121.09

Macromolecule Entities
Molecule Chains Length Organism Details
MACROPHAGE METALLOELASTASE A, B 159 Homo sapiens EC#: 3.4.24.65 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 106-264
Details: COMPLEXED WITH A SMALL MOLECULE INHIBITOR (2R)-3-({[4-[(PYRIDIN-4-YL)PHENYL]-THIEN-2-YL} CARBOXAMIDO)(PHENYL)PROPANOIC ACID FORMULA C25 H19 N2 O2 S AND ALSO WITH ACETOHYDROXAMIC ACID OR 2-HYDROXYAMINO -2-ETHANAL FORMULA, C2H5NO2
Gene Name(s): MMP12 Gene View HME

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PF3
Query on PF3

A, B (2R)-3-({[4-[(PYRIDIN-4-YL)PHENYL]-THIEN- 2-YL}CARBOXAMIDO)(PHENYL)PROPANOIC ACID
PF-00356231; 3-PHENYL-3-({[4-(4-PYRIDIN-4- YLPHENYL)THIEN-2-YL]CARBONYL}AMINO)PROPANOIC ACID (Synonym)
C25 H20 N2 O3 S
VMTJQZUZINLEKC-JOCHJYFZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HAE
Query on HAE

A, B ACETOHYDROXAMIC ACID
C2 H5 N O2
RRUDCFGSUDOHDG-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PF3 IC50: 14 nM (100) BindingDB

IC50: 14 nM  BindingMOAD
IC50: 1400 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.224
  • Space Group: P 63 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 123.22 α = 90.00
b = 123.22 β = 90.00
c = 168.20 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-12-12
  • Released Date: 2004-12-15
  • Deposition author(s): Morales, R., Perrier, S., Florent, J.M., Beltra, J., Dufour, S., De Mendez, I., Manceau, P., Tertre, A., Moreau, F., Compere, D., Dublanchet, A.C., O'Gara, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4