1U4O

Plasmodium falciparum lactate dehydrogenase complexed with 2,6-naphthalenedicarboxylic acid

Structural Biology Knowledgebase: 1U4O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.181
  • R-Value Work: 0.145

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1U4O

Classification: OXIDOREDUCTASE

Total Structure Weight: 35299.24

Macromolecule Entities
Molecule Chains Length Organism Details
L-lactate dehydrogenase A 321 Plasmodium falciparum EC#: 1.1.1.27 IUBMB

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer
 
JSmol
NDD
Query on NDD

A 2,6-DICARBOXYNAPHTHALENE
C12 H8 O4
RXOHFPCZGPKIRD-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.181
  • R-Value Work: 0.145
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 80.20 α = 90.00
b = 85.22 β = 90.00
c = 92.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2004-07-26
  • Released Date: 2005-06-21
  • Deposition author(s): Conners, R., Cameron, A., Read, J., Schambach, F., Sessions, R.B., Brady, R.L.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4