Structure of a reaction intermediate in the photocycle of PYP extracted by a SVD-driven analysis
1S4R
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Photosynthesis
    Structure Weight: 14052.86
    Molecule: Photoactive yellow protein
    Polymer: 1 Type: protein Length: 125
    Chains: A
    Organism: Halorhodospira halophila
    Gene Name: pyp
    UniProtKB: Protein Feature View | Search PDB | P16113  
     
  •   Structure Validation Hide

    View the full validation report  

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Halorhodospira halophila   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1S4S   Intermediate of PYP populated from 0.1ms to 5ms 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    HC4
    Search 
    Download 
    HC4 C9 H8 O3
    4'-HYDROXYCINNAMIC ACID
    HC4:1S4R
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Schmidt, M.,  Pahl, R.,  Srajer, V.,  Anderson, S.,  Ren, Z.,  Ihee, H.,  Rajagopal, S.,  Moffat, K.

    Deposition:   2004-01-17
    Release:   2004-04-13
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   1.90
    R-Value: 0.242 (obs.)
    R-Free: 0.259
    Space Group: P 63
    Unit Cell:
      Length [Å] Angles [°]
    a = 66.90 α = 90.00 
    b = 66.90 β = 90.00 
    c = 40.80 γ = 120.00