1OKC

structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside

Structural Biology Knowledgebase: 1OKC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1OKC

Classification: TRANSPORT PROTEIN

Total Structure Weight: 41804.08

Macromolecule Entities
Molecule Chains Length Organism Details
ADP, ATP CARRIER PROTEIN HEART ISOFORM T1 A 297 Bos taurus Gene Name(s): SLC25A4 Gene View ANT1

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Antiporters

Protein Name: Mitochondrial ADP/ATP Carrier


Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CDL
Query on CDL

A CARDIOLIPIN
3'-SN-GLYCEROL, (Synonym)
C81 H156 O17 P2
XVTUQDWPJJBEHJ-KZCWQMDCSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PC1
Query on PC1

A 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
3-SN-PHOSPHATIDYLCHOLINE (Synonym)
C44 H88 N O8 P
NRJAVPSFFCBXDT-HUESYALOSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CXT
Query on CXT

A Carboxyatractyloside
C31 H46 O18 S2
AQFATIOBERWBDY-LNQSNDDKSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LDM
Query on LDM

A 3-LAURYLAMIDO-N,N'-DIMETHYLPROPYLAMINOXYDE
[3-(DODECANOYLAMINO)PROPYL](HYDROXY)DIMETHYLAMMONIUM (Synonym)
C17 H36 N2 O2
JNGWKQJZIUZUPR-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.220
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 85.44 α = 90.00
b = 83.46 β = 90.00
c = 49.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-21
  • Released Date: 2003-11-07
  • Deposition author(s): Pebay-Peyroula, E., Dahout-Gonzalez, C., Kahn, R., Trez&E;guet, V., Lauquin, G.J.-M., Brandolin, G.

Revision History

  • 2014-01-29
    Type: Refinement description | Details: REMARK 3
  • 2014-01-29
    Type: Non-polymer description | Details: HETSYN,FORMUL,HETNAM
  • 2014-01-29
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2014-01-29
    Type: Geometry validation | Details: REMARK 500
  • 2014-01-29
    Type: Function and keywords | Details: KEYWDS
  • 2014-01-29
    Type: Source and taxonomy | Details: SOURCE
  • 2014-01-29
    Type: Advisory | Details: CAVEAT
  • 2014-01-29
    Type: Other | Details: REMARK 525,HEADER,REMARK 280,REMARK 610
  • 2014-01-29
    Type: Version format compliance | Details: REMARK 4