1ODV

PHOTOACTIVE YELLOW PROTEIN 1-25 DELETION MUTANT

Structural Biology Knowledgebase: 1ODV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.14 Å
  • R-Value Observed: 0.147

Literature

Macromolecules
Sequence Display for 1ODV

Classification: SIGNALLING

Total Structure Weight: 22691.82

Macromolecule Entities
Molecule Chains Length Organism Details
PHOTOACTIVE YELLOW PROTEIN A, B 100 Halorhodospira halophila Fragment: RESIDUES 26-125
Details: P-COUMARIC ACID
Gene Name(s): pyp
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HC4
Query on HC4

A, B 4'-HYDROXYCINNAMIC ACID
PARA-COUMARIC ACID (Synonym)
C9 H8 O3
NGSWKAQJJWESNS-ZZXKWVIFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.14 Å
  • R-Value Observed: 0.147
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 82.57 α = 90.00
b = 82.57 β = 90.00
c = 63.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-14
  • Released Date: 2003-03-18
  • Deposition author(s): Vreede, J., Van Der Horst, M.A., Hellingwerf, K.J., Crielaard, W., Van Aalten, D.M.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4