1N6B

Microsomal Cytochrome P450 2C5/3LVdH Complex with a dimethyl derivative of sulfaphenazole

Structural Biology Knowledgebase: 1N6B SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.257

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1N6B

Classification: OXIDOREDUCTASE

Total Structure Weight: 55020.91

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome P450 2C5 A 473 Oryctolagus cuniculus EC#: 1.14.14.1 IUBMB
Mutation: N202H, R206E, I207L, S209G, S210T
Gene Name(s): CYP2C5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMZ
Query on DMZ

A 4-METHYL-N-METHYL-N-(2-PHENYL-2H-PYRAZOL- 3-YL)BENZENESULFONAMIDE
DIMETHYLSULFAPHENAZOLE (Synonym)
C17 H17 N3 O2 S
KRHPBWNETCEFGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DMZ N/A in BindingDB
Kd: 20000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.257
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 74.33 α = 90.00
b = 134.29 β = 90.00
c = 171.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-09
  • Released Date: 2003-06-03
  • Deposition author(s): Wester, M.R., Johnson, E.F., Marques-Soares, C., Dansette, P.M., Mansuy, D., Stout, C.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values